printf '

' | fink --no-use-binary-dist --yes  --build-as-nobody rebuild cd-hit 2>&1
WARNING: your info file index has not been updated for 22 days. You should
run 'fink selfupdate' to get the latest package descriptions.
The package 'cd-hit' will be built without being installed.
Reading build dependency for cd-hit-4.6.1-2012-08-27-2...
Reading dependency for cd-hit-4.6.1-2012-08-27-2...
Reading build conflict for cd-hit-4.6.1-2012-08-27-2...
The package 'gcc49-compiler' will be installed.
Reading dependency for gcc49-compiler-4.9.1-1000...
Reading runtime dependency for gcc49-compiler-4.9.1-1000...
The package 'gcc49-shlibs' will be installed.
Reading dependency for gcc49-shlibs-4.9.1-1000...
Reading runtime dependency for gcc49-shlibs-4.9.1-1000...
The package 'gmp5-shlibs' will be installed.
Reading dependency for gmp5-shlibs-6.0.0a-1...
Reading runtime dependency for gmp5-shlibs-6.0.0a-1...
The package 'libgmpxx5-shlibs' will be installed.
Reading dependency for libgmpxx5-shlibs-6.0.0a-1...
Reading runtime dependency for libgmpxx5-shlibs-6.0.0a-1...
The package 'libmpfr4-shlibs' will be installed.
Reading dependency for libmpfr4-shlibs-3.1.2-1...
Reading runtime dependency for libmpfr4-shlibs-3.1.2-1...
The package 'cloog-org2-shlibs' will be installed.
Reading dependency for cloog-org2-shlibs-0.18.2-1...
Reading runtime dependency for cloog-org2-shlibs-0.18.2-1...
The package 'isl-shlibs' will be installed.
Reading dependency for isl-shlibs-0.12.2-2...
Reading runtime dependency for isl-shlibs-0.12.2-2...
The package 'libmpc3-shlibs' will be installed.
Reading dependency for libmpc3-shlibs-1.0.2-1...
Reading runtime dependency for libmpc3-shlibs-1.0.2-1...
The following package will be rebuilt:
 cd-hit
The following 8 additional packages will be installed:
 cloog-org2-shlibs gcc49-compiler gcc49-shlibs gmp5-shlibs isl-shlibs
 libgmpxx5-shlibs libmpc3-shlibs libmpfr4-shlibs
Do you want to continue? [Y/n] (assuming default)
Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libgmpxx5-shlibs_6.0.0a-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/gmp5-shlibs_6.0.0a-1_darwin-x86_64.deb
Selecting previously deselected package libgmpxx5-shlibs.
(Reading database ... 4405 files and directories currently installed.)
Unpacking libgmpxx5-shlibs (from .../libgmpxx5-shlibs_6.0.0a-1_darwin-x86_64.deb) ...
Selecting previously deselected package gmp5-shlibs.
Unpacking gmp5-shlibs (from .../gmp5-shlibs_6.0.0a-1_darwin-x86_64.deb) ...
Setting up gmp5-shlibs (6.0.0a-1) ...

Setting up libgmpxx5-shlibs (6.0.0a-1) ...

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libmpfr4-shlibs_3.1.2-1_darwin-x86_64.deb
Selecting previously deselected package libmpfr4-shlibs.
(Reading database ... 4434 files and directories currently installed.)
Unpacking libmpfr4-shlibs (from .../libmpfr4-shlibs_3.1.2-1_darwin-x86_64.deb) ...
Setting up libmpfr4-shlibs (3.1.2-1) ...

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/devel/isl-shlibs_0.12.2-2_darwin-x86_64.deb
Selecting previously deselected package isl-shlibs.
(Reading database ... 4447 files and directories currently installed.)
Unpacking isl-shlibs (from .../isl-shlibs_0.12.2-2_darwin-x86_64.deb) ...
Setting up isl-shlibs (0.12.2-2) ...

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libmpc3-shlibs_1.0.2-1_darwin-x86_64.deb
Selecting previously deselected package libmpc3-shlibs.
(Reading database ... 4448 files and directories currently installed.)
Unpacking libmpc3-shlibs (from .../libmpc3-shlibs_1.0.2-1_darwin-x86_64.deb) ...
Setting up libmpc3-shlibs (1.0.2-1) ...

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/devel/cloog-org2-shlibs_0.18.2-1_darwin-x86_64.deb
Selecting previously deselected package cloog-org2-shlibs.
(Reading database ... 4451 files and directories currently installed.)
Unpacking cloog-org2-shlibs (from .../cloog-org2-shlibs_0.18.2-1_darwin-x86_64.deb) ...
Setting up cloog-org2-shlibs (0.18.2-1) ...

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/gcc49-compiler_4.9.1-1000_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb
Selecting previously deselected package gcc49-compiler.
(Reading database ... 4452 files and directories currently installed.)
Unpacking gcc49-compiler (from .../gcc49-compiler_4.9.1-1000_darwin-x86_64.deb) ...
Selecting previously deselected package gcc49-shlibs.
Unpacking gcc49-shlibs (from .../gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb) ...
Setting up gcc49-shlibs (4.9.1-1000) ...
Clearing dependency_libs of .la files being installed

Setting up gcc49-compiler (4.9.1-1000) ...
Clearing dependency_libs of .la files being installed

Setting runtime build-lock...
dpkg-deb -b /sw/build.build/root-fink-buildlock-cd-hit-4.6.1-2012-08-27-2 /sw/build.build
dpkg-deb: building package `fink-buildlock-cd-hit-4.6.1-2012-08-27-2' in `/sw/build.build/fink-buildlock-cd-hit-4.6.1-2012-08-27-2_2014.08.16-09.17.51_darwin-x86_64.deb'.
Installing build-lock package...
/sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cd-hit-4.6.1-2012-08-27-2_2014.08.16-09.17.51_darwin-x86_64.deb
Selecting previously deselected package fink-buildlock-cd-hit-4.6.1-2012-08-27-2.
(Reading database ... 9989 files and directories currently installed.)
Unpacking fink-buildlock-cd-hit-4.6.1-2012-08-27-2 (from .../fink-buildlock-cd-hit-4.6.1-2012-08-27-2_2014.08.16-09.17.51_darwin-x86_64.deb) ...
Setting up fink-buildlock-cd-hit-4.6.1-2012-08-27-2 (2014.08.16-09.17.51) ...

sudo -u fink-bld [ENV] sh -c /tmp/fink.pUoX_
env LANG=C LC_ALL=C /sw/bin/tar  --no-same-owner --no-same-permissions -xvf /sw/src/cd-hit-v4.6.1-2012-08-27.tgz
cd-hit-v4.6.1-2012-08-27/
cd-hit-v4.6.1-2012-08-27/cdhit-common.h
cd-hit-v4.6.1-2012-08-27/clstr_reduce.pl
cd-hit-v4.6.1-2012-08-27/README
cd-hit-v4.6.1-2012-08-27/Makefile
cd-hit-v4.6.1-2012-08-27/clstr_cut.pl
cd-hit-v4.6.1-2012-08-27/clstr_rep.pl
cd-hit-v4.6.1-2012-08-27/clstr_quality_eval_by_link.pl
cd-hit-v4.6.1-2012-08-27/clstr2tree.pl
cd-hit-v4.6.1-2012-08-27/clstr_merge_noorder.pl
cd-hit-v4.6.1-2012-08-27/cd-hit-para.pl
cd-hit-v4.6.1-2012-08-27/cdhit-utility.c++
cd-hit-v4.6.1-2012-08-27/clstr_size_histogram.pl
cd-hit-v4.6.1-2012-08-27/license.txt
cd-hit-v4.6.1-2012-08-27/ChangeLog
cd-hit-v4.6.1-2012-08-27/cdhit-div.c++
cd-hit-v4.6.1-2012-08-27/cd-hit-div.pl
cd-hit-v4.6.1-2012-08-27/cdhit-2d.c++
cd-hit-v4.6.1-2012-08-27/cdhit-est-2d.c++
cd-hit-v4.6.1-2012-08-27/psi-cd-hit-2d-g1.pl
cd-hit-v4.6.1-2012-08-27/psi-cd-hit-local.pl
cd-hit-v4.6.1-2012-08-27/clstr_quality_eval.pl
cd-hit-v4.6.1-2012-08-27/cdhit-common.c++
cd-hit-v4.6.1-2012-08-27/clstr2txt.pl
cd-hit-v4.6.1-2012-08-27/clstr_sql_tbl_sort.pl
cd-hit-v4.6.1-2012-08-27/make_multi_seq.pl
cd-hit-v4.6.1-2012-08-27/cd-hit-2d-para.pl
cd-hit-v4.6.1-2012-08-27/clstr_size_stat.pl
cd-hit-v4.6.1-2012-08-27/plot_2d.pl
cd-hit-v4.6.1-2012-08-27/plot_len1.pl
cd-hit-v4.6.1-2012-08-27/clstr_sort_by.pl
cd-hit-v4.6.1-2012-08-27/cdhit-utility.h
cd-hit-v4.6.1-2012-08-27/doc/
cd-hit-v4.6.1-2012-08-27/doc/Figure1.png
cd-hit-v4.6.1-2012-08-27/doc/Figure3.png
cd-hit-v4.6.1-2012-08-27/doc/dokuwiki2latex.dao
cd-hit-v4.6.1-2012-08-27/doc/Figure2.png
cd-hit-v4.6.1-2012-08-27/doc/Figure4.png
cd-hit-v4.6.1-2012-08-27/doc/cdhit-user-guide.pdf
cd-hit-v4.6.1-2012-08-27/doc/cdhit-user-guide.wiki
cd-hit-v4.6.1-2012-08-27/doc/cdhit-user-guide.tex
cd-hit-v4.6.1-2012-08-27/clstr2xml.pl
cd-hit-v4.6.1-2012-08-27/cdhit.c++
cd-hit-v4.6.1-2012-08-27/psi-cd-hit-2d.pl
cd-hit-v4.6.1-2012-08-27/psi-cd-hit.pl
cd-hit-v4.6.1-2012-08-27/clstr_reps_faa_rev.pl
cd-hit-v4.6.1-2012-08-27/clstr_merge.pl
cd-hit-v4.6.1-2012-08-27/clstr_sql_tbl.pl
cd-hit-v4.6.1-2012-08-27/clstr_select.pl
cd-hit-v4.6.1-2012-08-27/clstr_select_rep.pl
cd-hit-v4.6.1-2012-08-27/clstr_rev.pl
cd-hit-v4.6.1-2012-08-27/cdhit-est.c++
cd-hit-v4.6.1-2012-08-27/cdhit-454.c++
cd-hit-v4.6.1-2012-08-27/clstr_renumber.pl
cd-hit-v4.6.1-2012-08-27/clstr_sort_prot_by.pl
sudo -u fink-bld [ENV] sh -c /tmp/fink.fq62c
make openmp=yes CC=gcc-fsf-4.9 CXX=g++-fsf-4.9 LDFLAGS="-lstdc++ -o"
gcc-fsf-4.9 -I/sw/include -fopenmp -O2  cdhit-common.c++ -c
gcc-fsf-4.9 -I/sw/include -fopenmp -O2  cdhit-utility.c++ -c
gcc-fsf-4.9 -I/sw/include -fopenmp -O2  cdhit.c++ -c
gcc-fsf-4.9 -I/sw/include -fopenmp -O2  cdhit.o cdhit-common.o cdhit-utility.o -lstdc++ -o cd-hit
gcc-fsf-4.9 -I/sw/include -fopenmp -O2  cdhit-est.c++ -c
gcc-fsf-4.9 -I/sw/include -fopenmp -O2  cdhit-est.o cdhit-common.o cdhit-utility.o -lstdc++ -o cd-hit-est
gcc-fsf-4.9 -I/sw/include -fopenmp -O2  cdhit-2d.c++ -c
gcc-fsf-4.9 -I/sw/include -fopenmp -O2  cdhit-2d.o cdhit-common.o cdhit-utility.o -lstdc++ -o cd-hit-2d
gcc-fsf-4.9 -I/sw/include -fopenmp -O2  cdhit-est-2d.c++ -c
gcc-fsf-4.9 -I/sw/include -fopenmp -O2  cdhit-est-2d.o cdhit-common.o cdhit-utility.o -lstdc++ -o cd-hit-est-2d
gcc-fsf-4.9 -I/sw/include -fopenmp -O2  cdhit-div.c++ -c
gcc-fsf-4.9 -I/sw/include -fopenmp -O2  cdhit-div.o cdhit-common.o cdhit-utility.o -lstdc++ -o cd-hit-div
gcc-fsf-4.9 -I/sw/include -fopenmp -O2  cdhit-454.c++ -c
gcc-fsf-4.9 -I/sw/include -fopenmp -O2  cdhit-454.o cdhit-common.o cdhit-utility.o -lstdc++ -o cd-hit-454
/bin/rm -rf /sw/build.build/root-cd-hit-4.6.1-2012-08-27-2
/bin/mkdir -p /sw/build.build/root-cd-hit-4.6.1-2012-08-27-2/sw
/bin/mkdir -p /sw/build.build/root-cd-hit-4.6.1-2012-08-27-2/DEBIAN
/usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cd-hit-4.6.1-2012-08-27-2
sudo -u fink-bld [ENV] sh -c /tmp/fink.JqKIh
mkdir -p /sw/build.build/root-cd-hit-4.6.1-2012-08-27-2/sw/bin
make install PREFIX=/sw/build.build/root-cd-hit-4.6.1-2012-08-27-2/sw/bin
for prog in cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div cd-hit-454; do \
		install -m 0755 $prog /sw/build.build/root-cd-hit-4.6.1-2012-08-27-2/sw/bin; \
	done
install -m 0755 *.pl /sw/build.build/root-cd-hit-4.6.1-2012-08-27-2/sw/bin;
sudo -u fink-bld [ENV] sh -c /tmp/fink.dGTPz
/usr/bin/install -d -m 700 /sw/build.build/root-cd-hit-4.6.1-2012-08-27-2/sw/share/doc/cd-hit
/bin/cp -r ChangeLog /sw/build.build/root-cd-hit-4.6.1-2012-08-27-2/sw/share/doc/cd-hit/
/bin/cp -r README /sw/build.build/root-cd-hit-4.6.1-2012-08-27-2/sw/share/doc/cd-hit/
/bin/cp -r doc/cdhit-user-guide.pdf /sw/build.build/root-cd-hit-4.6.1-2012-08-27-2/sw/share/doc/cd-hit/
/bin/chmod -R go=u-w /sw/build.build/root-cd-hit-4.6.1-2012-08-27-2/sw/share/doc/cd-hit
/bin/rm -f /sw/build.build/root-cd-hit-4.6.1-2012-08-27-2/sw/info/dir /sw/build.build/root-cd-hit-4.6.1-2012-08-27-2/sw/info/dir.old /sw/build.build/root-cd-hit-4.6.1-2012-08-27-2/sw/share/info/dir /sw/build.build/root-cd-hit-4.6.1-2012-08-27-2/sw/share/info/dir.old
Reverting ownership of install dir to root
Writing control file...
Writing md5sums file...
env LANG=C LC_ALL=C dpkg-deb -b root-cd-hit-4.6.1-2012-08-27-2 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci
dpkg-deb: building package `cd-hit' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/cd-hit_4.6.1-2012-08-27-2_darwin-x86_64.deb'.
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-cd-hit-4.6.1-2012-08-27-2
(Reading database ... 9990 files and directories currently installed.)
Removing fink-buildlock-cd-hit-4.6.1-2012-08-27-2 ...