printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cell-id 2>&1 The package 'cell-id' will be built without being installed. Reading build dependency for cell-id-1.4.6-1... Reading dependency for cell-id-1.4.6-1... Reading build conflict for cell-id-1.4.6-1... The package 'dos2unix' will be installed. Reading dependency for dos2unix-6.0.5-1... Reading runtime dependency for dos2unix-6.0.5-1... The package 'libtiff5' will be installed. Reading dependency for libtiff5-4.0.3-5... Reading runtime dependency for libtiff5-4.0.3-5... The following package will be rebuilt: cell-id The following 2 additional packages will be installed: dos2unix libtiff5 Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/cell_id_1.4.6.zip % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 21 512k 21 111k 0 0 208k 0 0:00:02 --:--:-- 0:00:02 208k 100 512k 100 512k 0 0 582k 0 --:--:-- --:--:-- --:--:-- 582k Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/dos2unix_6.0.5-1_darwin-x86_64.deb Selecting previously deselected package dos2unix. (Reading database ... 15243 files and directories currently installed.) Unpacking dos2unix (from .../dos2unix_6.0.5-1_darwin-x86_64.deb) ... Setting up dos2unix (6.0.5-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libtiff5_4.0.3-5_darwin-x86_64.deb Selecting previously deselected package libtiff5. (Reading database ... 15260 files and directories currently installed.) Unpacking libtiff5 (from .../libtiff5_4.0.3-5_darwin-x86_64.deb) ... Setting up libtiff5 (4.0.3-5) ... Clearing dependency_libs of .la files being installed Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cell-id-1.4.6-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cell-id-1.4.6-1' in `/sw/build.build/fink-buildlock-cell-id-1.4.6-1_2014.07.29-08.31.08_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cell-id-1.4.6-1_2014.07.29-08.31.08_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cell-id-1.4.6-1. (Reading database ... 15468 files and directories currently installed.) Unpacking fink-buildlock-cell-id-1.4.6-1 (from .../fink-buildlock-cell-id-1.4.6-1_2014.07.29-08.31.08_darwin-x86_64.deb) ... Setting up fink-buildlock-cell-id-1.4.6-1 (2014.07.29-08.31.08) ... sudo -u fink-bld [ENV] sh -c /tmp/fink._rwoB unzip -o /sw/src/cell_id_1.4.6.zip Archive: /sw/src/cell_id_1.4.6.zip inflating: cell_id_1.4.6/align_image.c inflating: cell_id_1.4.6/align_image.h inflating: cell_id_1.4.6/align_image.o inflating: cell_id_1.4.6/attachtmp.txt inflating: cell_id_1.4.6/cell.c inflating: cell_id_1.4.6/cell.exe inflating: cell_id_1.4.6/cell.o inflating: cell_id_1.4.6/cell_id_description_of_output_file_R.txt inflating: cell_id_1.4.6/cell_id_description_of_output_files_PAW.txt inflating: cell_id_1.4.6/Cell-ID-help.txt inflating: cell_id_1.4.6/complex.h inflating: cell_id_1.4.6/contiguous.c inflating: cell_id_1.4.6/contiguous.h inflating: cell_id_1.4.6/contiguous.o inflating: cell_id_1.4.6/date_and_time.c inflating: cell_id_1.4.6/date_and_time.h inflating: cell_id_1.4.6/date_and_time.o inflating: cell_id_1.4.6/fft.c inflating: cell_id_1.4.6/fft.h inflating: cell_id_1.4.6/fft.o inflating: cell_id_1.4.6/fft_stats.c inflating: cell_id_1.4.6/fft_stats.h inflating: cell_id_1.4.6/fft_stats.o inflating: cell_id_1.4.6/file_type.h inflating: cell_id_1.4.6/fit.c inflating: cell_id_1.4.6/fit.h inflating: cell_id_1.4.6/fit.o inflating: cell_id_1.4.6/fl_dist.c inflating: cell_id_1.4.6/fl_dist.h inflating: cell_id_1.4.6/fl_dist.o inflating: cell_id_1.4.6/flatten.c inflating: cell_id_1.4.6/flatten.h inflating: cell_id_1.4.6/flatten.o inflating: cell_id_1.4.6/GNU_Lesser_General_Public_License.txt inflating: cell_id_1.4.6/image_type.h inflating: cell_id_1.4.6/Makefile inflating: cell_id_1.4.6/Makefile.old inflating: cell_id_1.4.6/nums.c inflating: cell_id_1.4.6/nums.h inflating: cell_id_1.4.6/nums.o inflating: cell_id_1.4.6/oif.c inflating: cell_id_1.4.6/oif.h inflating: cell_id_1.4.6/parameters.h inflating: cell_id_1.4.6/parameters.txt inflating: cell_id_1.4.6/point.h inflating: cell_id_1.4.6/ran.h inflating: cell_id_1.4.6/README.txt inflating: cell_id_1.4.6/segment.c inflating: cell_id_1.4.6/segment.h inflating: cell_id_1.4.6/segment.o inflating: cell_id_1.4.6/split_and_overlap.c inflating: cell_id_1.4.6/split_and_overlap.h inflating: cell_id_1.4.6/split_and_overlap.o inflating: cell_id_1.4.6/tif.c inflating: cell_id_1.4.6/tif.o inflating: cell_id_1.4.6/tif_routines.h sudo -u fink-bld [ENV] sh -c /tmp/fink.bf_ak [ -r /sw/fink/dists/stable/main/finkinfo/sci/cell-id.patch ] sudo -u fink-bld [ENV] sh -c /tmp/fink.4Uhnq dos2unix Makefile dos2unix: converting file Makefile to Unix format... sed 's|@FINKPREFIX@|/sw|g' < /sw/fink/dists/stable/main/finkinfo/sci/cell-id.patch | patch -p1 patching file Makefile sudo -u fink-bld [ENV] sh -c /tmp/fink.cPzvM make clean rm -f cell cell.o segment.o tif.o nums.o date_and_time.o fit.o fft.o fft_stats.o split_and_overlap.o contiguous.o fl_dist.o align_image.o flatten.o make cc -Wall -I/sw/include -I/sw/include/glib-2.0 -I/sw/lib/glib-2.0/include -L/sw/lib -I/sw/include -c -o cell.o cell.c cc -Wall -I/sw/include -I/sw/include/glib-2.0 -I/sw/lib/glib-2.0/include -L/sw/lib -I/sw/include -c -o segment.o segment.c cc -Wall -I/sw/include -I/sw/include/glib-2.0 -I/sw/lib/glib-2.0/include -L/sw/lib -I/sw/include -c -o tif.o tif.c cc -Wall -I/sw/include -I/sw/include/glib-2.0 -I/sw/lib/glib-2.0/include -L/sw/lib -I/sw/include -c -o nums.o nums.c cc -Wall -I/sw/include -I/sw/include/glib-2.0 -I/sw/lib/glib-2.0/include -L/sw/lib -I/sw/include -c -o date_and_time.o date_and_time.c cc -Wall -I/sw/include -I/sw/include/glib-2.0 -I/sw/lib/glib-2.0/include -L/sw/lib -I/sw/include -c -o fit.o fit.c cc -Wall -I/sw/include -I/sw/include/glib-2.0 -I/sw/lib/glib-2.0/include -L/sw/lib -I/sw/include -c -o fft.o fft.c cc -Wall -I/sw/include -I/sw/include/glib-2.0 -I/sw/lib/glib-2.0/include -L/sw/lib -I/sw/include -c -o fft_stats.o fft_stats.c clangclang: : warningclangclang: clangwarning: : warningclangclang: : warningargument unused during compilation: '-L/sw/lib'clang: warning: warning: warningargument unused during compilation: '-L/sw/lib': argument unused during compilation: '-L/sw/lib': : argument unused during compilation: '-L/sw/lib' : argument unused during compilation: '-L/sw/lib'argument unused during compilation: '-L/sw/lib'argument unused during compilation: '-L/sw/lib' : warning: argument unused during compilation: '-L/sw/lib' cc -Wall -I/sw/include -I/sw/include/glib-2.0 -I/sw/lib/glib-2.0/include -L/sw/lib -I/sw/include -c -o split_and_overlap.o split_and_overlap.c cc -Wall -I/sw/include -I/sw/include/glib-2.0 -I/sw/lib/glib-2.0/include -L/sw/lib -I/sw/include -c -o contiguous.o contiguous.c clang: warning: argument unused during compilation: '-L/sw/lib' cc -Wall -I/sw/include -I/sw/include/glib-2.0 -I/sw/lib/glib-2.0/include -L/sw/lib -I/sw/include -c -o fl_dist.o fl_dist.c cc -Wall -I/sw/include -I/sw/include/glib-2.0 -I/sw/lib/glib-2.0/include -L/sw/lib -I/sw/include -c -o align_image.o align_image.c clang: warning: argument unused during compilation: '-L/sw/lib' segment.c:2174:11: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare] if ((iy1<0)||(ix1<0)){ ~~~^~ segment.c:2174:20: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare] if ((iy1<0)||(ix1<0)){ ~~~^~ cc -Wall -I/sw/include -I/sw/include/glib-2.0 -I/sw/lib/glib-2.0/include -L/sw/lib -I/sw/include -c -o flatten.o flatten.c tif.c:126:6: warning: variable 'bitspersample' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] if(tif){ ^~~ tif.c:194:6: note: uninitialized use occurs here if(bitspersample==16){ ^~~~~~~~~~~~~ clang: warning: argument unused during compilation: '-L/sw/lib' clang: warning: argument unused during compilation: '-L/sw/lib' tif.c:126:3: note: remove the 'if' if its condition is always true if(tif){ ^~~~~~~ tif.c:93:36: note: initialize the variable 'bitspersample' to silence this warning uint16 planarconfig,bitspersample; ^ = 0 1 warning generated. clang: warning: argument unused during compilation: '-L/sw/lib' 2 warnings generated. cc -o cell -Wall -I/sw/include -I/sw/include/glib-2.0 -I/sw/lib/glib-2.0/include -L/sw/lib cell.o segment.o tif.o nums.o date_and_time.o fit.o fft.o fft_stats.o split_and_overlap.o contiguous.o fl_dist.o align_image.o flatten.o -lm -ltiff -lglib-2.0 /bin/rm -rf /sw/build.build/root-cell-id-1.4.6-1 /bin/mkdir -p /sw/build.build/root-cell-id-1.4.6-1/sw /bin/mkdir -p /sw/build.build/root-cell-id-1.4.6-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cell-id-1.4.6-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.AgZj1 mkdir -p /sw/build.build/root-cell-id-1.4.6-1/sw/bin cp cell /sw/build.build/root-cell-id-1.4.6-1/sw/bin sudo -u fink-bld [ENV] sh -c /tmp/fink.y8DA9 /usr/bin/install -d -m 700 /sw/build.build/root-cell-id-1.4.6-1/sw/share/doc/cell-id /bin/cp -r Cell-ID-help.txt /sw/build.build/root-cell-id-1.4.6-1/sw/share/doc/cell-id/ /bin/cp -r GNU_Lesser_General_Public_License.txt /sw/build.build/root-cell-id-1.4.6-1/sw/share/doc/cell-id/ /bin/cp -r README.txt /sw/build.build/root-cell-id-1.4.6-1/sw/share/doc/cell-id/ /bin/cp -r cell_id_description_of_output_file_R.txt /sw/build.build/root-cell-id-1.4.6-1/sw/share/doc/cell-id/ /bin/cp -r cell_id_description_of_output_files_PAW.txt /sw/build.build/root-cell-id-1.4.6-1/sw/share/doc/cell-id/ /bin/cp -r parameters.txt /sw/build.build/root-cell-id-1.4.6-1/sw/share/doc/cell-id/ /bin/chmod -R go=u-w /sw/build.build/root-cell-id-1.4.6-1/sw/share/doc/cell-id /bin/rm -f /sw/build.build/root-cell-id-1.4.6-1/sw/info/dir /sw/build.build/root-cell-id-1.4.6-1/sw/info/dir.old /sw/build.build/root-cell-id-1.4.6-1/sw/share/info/dir /sw/build.build/root-cell-id-1.4.6-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cell-id-1.4.6-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `cell-id' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/cell-id_1.4.6-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cell-id-1.4.6-1 (Reading database ... 15469 files and directories currently installed.) Removing fink-buildlock-cell-id-1.4.6-1 ...