printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-gdata-r31 2>&1 The package 'cran-gdata-r31' will be built without being installed. Reading build dependency for cran-gdata-r31-2.13.3-1... Reading dependency for cran-gdata-r31-2.13.3-1... Reading build conflict for cran-gdata-r31-2.13.3-1... The package 'r-base31-dev' will be installed. Reading dependency for r-base31-dev-3.1.1-2... Reading runtime dependency for r-base31-dev-3.1.1-2... The package 'r-base31' will be installed. Reading dependency for r-base31-3.1.1-2... Reading runtime dependency for r-base31-3.1.1-2... The package 'cran-gtools-r31' will be installed. Reading dependency for cran-gtools-r31-3.4.0-2... Reading runtime dependency for cran-gtools-r31-3.4.0-2... The package 'r-base31-shlibs' will be installed. Reading dependency for r-base31-shlibs-3.1.1-2... Reading runtime dependency for r-base31-shlibs-3.1.1-2... The following package will be rebuilt: cran-gdata-r31 The following 4 additional packages will be installed: cran-gtools-r31 r-base31 r-base31-dev r-base31-shlibs Do you want to continue? [Y/n] (assuming default) Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base31_3.1.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-shlibs_3.1.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-dev_3.1.1-2_darwin-x86_64.deb Selecting previously deselected package r-base31. (Reading database ... 7384 files and directories currently installed.) Unpacking r-base31 (from .../r-base31_3.1.1-2_darwin-x86_64.deb) ... Selecting previously deselected package r-base31-shlibs. Unpacking r-base31-shlibs (from .../r-base31-shlibs_3.1.1-2_darwin-x86_64.deb) ... Selecting previously deselected package r-base31-dev. dpkg: considering removing r-base30-dev in favour of r-base31-dev ... dpkg: yes, will remove r-base30-dev in favour of r-base31-dev. Unpacking r-base31-dev (from .../r-base31-dev_3.1.1-2_darwin-x86_64.deb) ... Setting up r-base31-shlibs (3.1.1-2) ... Setting up r-base31-dev (3.1.1-2) ... Setting up r-base31 (3.1.1-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/cran-gtools-r31_3.4.0-2_darwin-x86_64.deb Selecting previously deselected package cran-gtools-r31. (Reading database ... 9302 files and directories currently installed.) Unpacking cran-gtools-r31 (from .../cran-gtools-r31_3.4.0-2_darwin-x86_64.deb) ... Setting up cran-gtools-r31 (3.4.0-2) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-gdata-r31-2.13.3-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-gdata-r31-2.13.3-1' in `/sw/build.build/fink-buildlock-cran-gdata-r31-2.13.3-1_2014.07.27-12.56.54_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-gdata-r31-2.13.3-1_2014.07.27-12.56.54_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-gdata-r31-2.13.3-1. (Reading database ... 9335 files and directories currently installed.) Unpacking fink-buildlock-cran-gdata-r31-2.13.3-1 (from .../fink-buildlock-cran-gdata-r31-2.13.3-1_2014.07.27-12.56.54_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-gdata-r31-2.13.3-1 (2014.07.27-12.56.54) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.tbzDb env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/gdata_2.13.3.tar.gz gdata/ gdata/inst/ gdata/inst/xls/ gdata/inst/xls/latin-1.xlsx gdata/inst/xls/latin-1.xls gdata/inst/xls/iris.xls gdata/inst/xls/ExampleExcelFile.xls gdata/inst/xls/ExampleExcelFile.xlsx gdata/inst/perl/ gdata/inst/perl/sheetNames.pl gdata/inst/perl/sheetCount.pl gdata/inst/perl/xls2tab.pl gdata/inst/perl/xls2csv.pl gdata/inst/perl/xls2tsv.pl gdata/inst/perl/OLE/ gdata/inst/perl/OLE/README-OLE-Storage_Lite gdata/inst/perl/OLE/Storage_Lite.pm gdata/inst/perl/module_tools.pl gdata/inst/perl/IO/ gdata/inst/perl/IO/AtomicFile.pm gdata/inst/perl/IO/Wrap.pm gdata/inst/perl/IO/InnerFile.pm gdata/inst/perl/IO/Scalar.pm gdata/inst/perl/IO/Lines.pm gdata/inst/perl/IO/WrapTie.pm gdata/inst/perl/IO/Scalar.pm.html gdata/inst/perl/IO/ScalarArray.pm gdata/inst/perl/IO/Stringy.pm gdata/inst/perl/Spreadsheet/ gdata/inst/perl/Spreadsheet/ParseExcel/ gdata/inst/perl/Spreadsheet/ParseExcel/FmtDefault.pm gdata/inst/perl/Spreadsheet/ParseExcel/Workbook.pm gdata/inst/perl/Spreadsheet/ParseExcel/SaveParser.pm gdata/inst/perl/Spreadsheet/ParseExcel/Format.pm gdata/inst/perl/Spreadsheet/ParseExcel/Utility.pm gdata/inst/perl/Spreadsheet/ParseExcel/Dump.pm gdata/inst/perl/Spreadsheet/ParseExcel/FmtJapan2.pm gdata/inst/perl/Spreadsheet/ParseExcel/Worksheet.pm gdata/inst/perl/Spreadsheet/ParseExcel/Cell.pm gdata/inst/perl/Spreadsheet/ParseExcel/SaveParser/ gdata/inst/perl/Spreadsheet/ParseExcel/SaveParser/Workbook.pm gdata/inst/perl/Spreadsheet/ParseExcel/SaveParser/Worksheet.pm gdata/inst/perl/Spreadsheet/ParseExcel/Font.pm gdata/inst/perl/Spreadsheet/ParseExcel/FmtUnicode.pm gdata/inst/perl/Spreadsheet/ParseExcel/FmtJapan.pm gdata/inst/perl/Spreadsheet/README-ParseExcel gdata/inst/perl/Spreadsheet/ParseExcel.pm gdata/inst/perl/Spreadsheet/XLSX/ gdata/inst/perl/Spreadsheet/XLSX/Utility2007.pm gdata/inst/perl/Spreadsheet/XLSX/Fmt2007.pm gdata/inst/perl/Spreadsheet/XLSX.pm gdata/inst/perl/Spreadsheet/README-XLS gdata/inst/perl/Archive/ gdata/inst/perl/Archive/README-Archive-Zip gdata/inst/perl/Archive/Zip.pm gdata/inst/perl/Archive/Zip/ gdata/inst/perl/Archive/Zip/Archive.pm gdata/inst/perl/Archive/Zip/BufferedFileHandle.pm gdata/inst/perl/Archive/Zip/ZipFileMember.pm gdata/inst/perl/Archive/Zip/NewFileMember.pm gdata/inst/perl/Archive/Zip/FileMember.pm gdata/inst/perl/Archive/Zip/StringMember.pm gdata/inst/perl/Archive/Zip/FAQ.pod gdata/inst/perl/Archive/Zip/Tree.pm gdata/inst/perl/Archive/Zip/MemberRead.pm gdata/inst/perl/Archive/Zip/DirectoryMember.pm gdata/inst/perl/Archive/Zip/MockFileHandle.pm gdata/inst/perl/Archive/Zip/Member.pm gdata/inst/perl/supportedFormats.pl gdata/inst/perl/VERSIONS gdata/inst/perl/install_modules.pl gdata/inst/NEWS gdata/inst/bin/ gdata/inst/bin/xls2csv.bat gdata/inst/bin/xls2csv gdata/inst/ChangeLog gdata/inst/doc/ gdata/inst/doc/unknown.Rnw gdata/inst/doc/Rnews.sty gdata/inst/doc/unknown.pdf gdata/inst/doc/unknown.R gdata/inst/doc/gregmisc.tex gdata/inst/doc/mapLevels.Rnw gdata/inst/doc/gregmisc.pdf gdata/inst/doc/mapLevels.R gdata/inst/doc/mapLevels.pdf gdata/tests/ gdata/tests/runRUnitTests.R gdata/tests/test.read.xls.Rout.save gdata/tests/tests.write.fwf.R gdata/tests/test.read.xls.R gdata/tests/test.write.fwf.eol.R gdata/tests/tests.write.fwf.Rout.save gdata/tests/unitTests/ gdata/tests/unitTests/Makefile gdata/tests/unitTests/runit.unknown.R gdata/tests/unitTests/runit.trimSum.R gdata/tests/unitTests/runit.bindData.R gdata/tests/unitTests/report.html gdata/tests/unitTests/runit.trim.R gdata/tests/unitTests/report.txt gdata/tests/unitTests/runit.cbindX.R gdata/tests/unitTests/runit.nPairs.R gdata/tests/unitTests/runit.write.fwf.R gdata/tests/unitTests/runit.getDateTimeParts.R gdata/tests/unitTests/runit.wideByFactor.R gdata/tests/unitTests/runit.mapLevels.R gdata/tests/unitTests/runit.drop.levels.R gdata/tests/unitTests/runit.reorder.factor.R gdata/NAMESPACE gdata/INSTALL gdata/NEWS gdata/data/ gdata/data/MedUnits.rda gdata/R/ gdata/R/is.what.R gdata/R/interleave.R gdata/R/reorder.R gdata/R/combine.R gdata/R/read.xls.R gdata/R/case.R gdata/R/xls2sep.R gdata/R/duplicated2.R gdata/R/upperTriangle.R gdata/R/unknown.R gdata/R/onAttach.R gdata/R/ConvertMedUnits.R gdata/R/env.R gdata/R/resample.R gdata/R/bindData.R gdata/R/drop.levels.R gdata/R/findPerl.R gdata/R/unmatrix.R gdata/R/write.fwf.R gdata/R/sheetCount.R gdata/R/trimSum.R gdata/R/nobs.R gdata/R/aggregate.table.R gdata/R/installXLSXsupport.R gdata/R/getDateTimeParts.R gdata/R/xlsFormats.R gdata/R/frameApply.R gdata/R/wideByFactor.R gdata/R/mapLevels.R gdata/R/trim.R gdata/R/ls.funs.R gdata/R/keep.R gdata/R/centerText.R gdata/R/ll.R gdata/R/elem.R gdata/R/cbindX.R gdata/R/rename.vars.R gdata/R/matchcols.R gdata/R/nPairs.R gdata/R/startsWith.R gdata/R/object.size.R gdata/R/Args.R gdata/R/ans.R gdata/vignettes/ gdata/vignettes/unknown.Rnw gdata/vignettes/Rnews.sty gdata/vignettes/mapLevels.Rnw gdata/MD5 gdata/build/ gdata/build/vignette.rds gdata/DESCRIPTION gdata/ChangeLog gdata/man/ gdata/man/getDateTimePart.Rd gdata/man/xlsFormats.Rd gdata/man/ConvertMedUnits.Rd gdata/man/matchcols.Rd gdata/man/interleave.Rd gdata/man/write.fwf.Rd gdata/man/is.what.Rd gdata/man/sheetCount.Rd gdata/man/elem.Rd gdata/man/nPairs.Rd gdata/man/combine.Rd gdata/man/keep.Rd gdata/man/env.Rd gdata/man/installXLSXsupport.Rd gdata/man/ls.funs.Rd gdata/man/centerText.Rd gdata/man/nobs.Rd gdata/man/ll.Rd gdata/man/unmatrix.Rd gdata/man/reorder.Rd gdata/man/case.Rd gdata/man/mapLevels.Rd gdata/man/gdata-package.Rd gdata/man/read.xls.Rd gdata/man/drop.levels.Rd gdata/man/gdata-defunct.Rd gdata/man/ans.Rd gdata/man/resample.Rd gdata/man/Args.Rd gdata/man/unknown.Rd gdata/man/startsWith.Rd gdata/man/bindData.Rd gdata/man/rename.vars.Rd gdata/man/trim.Rd gdata/man/trimSum.Rd gdata/man/upperTriangle.Rd gdata/man/wideByFactor.Rd gdata/man/frameApply.Rd gdata/man/object.size.Rd gdata/man/cbindX.Rd gdata/man/humanReadable.Rd gdata/man/MedUnits.Rd gdata/man/duplicated2.Rd gdata/.Rinstignore sudo -u fink-bld [ENV] sh -c /tmp/fink.vu6kE /tmp/fink.DUZm1 #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-gdata-r31-2.13.3-1/gdata/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R pushd .. /sw/build.build/cran-gdata-r31-2.13.3-1 /sw/build.build/cran-gdata-r31-2.13.3-1/gdata if [[ 3.1 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes gdata else $BIN_R --verbose CMD build --no-vignettes gdata fi * checking for file 'gdata/DESCRIPTION' ... OK * preparing 'gdata': * checking DESCRIPTION meta-information ... OK * checking vignette meta-information ... OK * checking for LF line-endings in source and make files * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * building 'gdata_2.13.3.tar.gz' /bin/rm -rf /sw/build.build/root-cran-gdata-r31-2.13.3-1 /bin/mkdir -p /sw/build.build/root-cran-gdata-r31-2.13.3-1/sw /bin/mkdir -p /sw/build.build/root-cran-gdata-r31-2.13.3-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-gdata-r31-2.13.3-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.KskVd /tmp/fink.ekedU #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R mkdir -p /sw/build.build/root-cran-gdata-r31-2.13.3-1/sw/lib/R/3.1/site-library pushd /sw/build.build/cran-gdata-r31-2.13.3-1/gdata/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-gdata-r31-2.13.3-1/sw/lib/R/3.1/site-library gdata /sw/build.build/cran-gdata-r31-2.13.3-1 /sw/build.build/cran-gdata-r31-2.13.3-1/gdata * installing *source* package 'gdata' ... ** package 'gdata' successfully unpacked and MD5 sums checked ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (gdata) sudo -u fink-bld [ENV] sh -c /tmp/fink.reDO0 /bin/rm -f /sw/build.build/root-cran-gdata-r31-2.13.3-1/sw/info/dir /sw/build.build/root-cran-gdata-r31-2.13.3-1/sw/info/dir.old /sw/build.build/root-cran-gdata-r31-2.13.3-1/sw/share/info/dir /sw/build.build/root-cran-gdata-r31-2.13.3-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-gdata-r31-2.13.3-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-gdata-r31' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-gdata-r31_2.13.3-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-gdata-r31-2.13.3-1 (Reading database ... 9336 files and directories currently installed.) Removing fink-buildlock-cran-gdata-r31-2.13.3-1 ...